| Index | index by Group | index by Distribution | index by Vendor | index by creation date | index by Name | Mirrors | Help | Search |
| Name: python313-pymol | Distribution: SUSE Linux Enterprise 16 |
| Version: 3.1.0 | Vendor: openSUSE |
| Release: bp160.1.10 | Build date: Fri Mar 14 18:31:28 2025 |
| Group: Productivity/Scientific/Chemistry | Build host: reproducible |
| Size: 24482932 | Source RPM: python-pymol-3.1.0-bp160.1.10.src.rpm |
| Packager: https://bugs.opensuse.org | |
| Url: https://pymol.org/ | |
| Summary: A Molecular Viewer | |
PyMOL is a molecular graphics system targetted at medium to large biomolecules like proteins. It can generate molecular graphics images and animations. Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a python interface The file formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.
Python-2.0
* Fri Mar 14 2025 Friedrich Haubensak <hsk17@mail.de>
- changes to .spec file:
* to make build work on leap 15.6, add sle15_python_module_pythons
and conditional BuildRequires: gcc12-c++
* drop skip_python2 and oldpython
* Wed Mar 12 2025 Friedrich Haubensak <hsk17@mail.de>
- update to 3.1.0
* File Support
- BCIF import support
- gzipped-compressed SDF (SDFGZ) import support
* Python API
- "delete_states" command (removal of one or more states)
- "declare_command" extension for improved ergonomics of introducing
and customizing PyMOL functionality
- "cell_color" setting for altering unit cell colors
* Developer & Infrastructure
- Migration from distutils to setuptools
* Tue Nov 12 2024 Bernhard Wiedemann <bwiedemann@suse.com>
- Add reproducible.patch to normalize build date (boo#1047218)
- Remove no-build-date.patch
* Thu Oct 10 2024 mcepl@cepl.eu
- Update to version 3.0.0+git.1725549602.9d3061c:
* Symbol renaming in molfile_plugin and internal linkage
* New command: delete_states
* mark bind() calls with override where needed
* Separate CGO to VBO logic out into functions
* Remove unused returnData
* Use vector for memory alloc
* Use struct for total vert counts in CGO.cpp
* Remove _PYMOL_IOS (Discontinued; prep for MVK)
* Python 3.12 TypeError: convert progress to int for progress bar
* Fix ray/draw panel error when modifying units
- Remove upstream patches:
* pymol3-version-compare.patch
* no-o3.patch
* pymol3-numpy2.patch
* Tue Oct 01 2024 <hsk17@mail.de>
- add patches:
* pymol3-numpy2.patch: add numpy-2 compatability
* pymol3-version-compare.patch: fix tests/helpers/test_utils.py
* Tue Jun 18 2024 <hsk17@mail.de>
- update to 3.0.0
* Panels
- Nucleic Acid Builder supported
- Scenes Panel (Basic version)
- Improved APBS electrostatics plugin integrated
* Distance/Bonding detection
- Halogen-bond detection and display
* Python API
- "fnab" command (sequence to nucleic acid chain)
- Improved CGO builder API
- get_sasa_relative() "subsele" argument added
- new clip modes/API
- iterate() adds "explicit_valence" and "explicit_degree"
- "cell_centered" setting added
- by grid-cell background gradient "bg_gradient=2"
- look_at() added
- experimental "curve_new" / "move_on_curve"
* Developer
- C++17 required
- pymol-testing integrated
- pytest introduced
- Github Actions CI
* And many other fixes and small additions provided by
developers and the community...
- spec file:
* re-add test related stuff as upstream introduced a pytest
based testing
* drop TestExporting.testglTF - requires an executable from
Schrodinger
* on Leap, drop / tweak some tests to fit old package versions
* Fri Aug 11 2023 <hsk17@mail.de>
- update to 2.5.0
* File Import/Export
- DX binary map import (*dxbin)
- PDB/MMTF export: symmetry information now added
- Improved FASTA import
- Support for map.gz and mrc.gz extensions
* Builder & Panels
- Improved Fuse command (disallows hypervalent bonds,
substitute monovalent atoms instead of attaching to them)
- Customizable keyboard shortcut menu
- Properties inspector now supports unsetting settings with
“Delete” key
* Graphics & Visualization
- Ray interior colors now match primitives with
`set ray_interior_color, atomic`
- Isomesh transparency support
- `sphere_mode` 5 removed (9 as replacement)
- Curved cartoon cylindrical helices
- Isosurface generation via marching cubes with setting
`isosurface_algorithm, (0, 1)` (0 requires VTKm)
* PBC Handling
- Periodic boundary conditions supported in rebond, smooth,
and intra_fit
* Python API
- Python 2 support removed
- pbc argument added to rebond, smooth, and intra_fit
- png(None) returns bytes
- scene_order() allows list for `names`
- pbc_wrap() and pbc_unwrap added
- matrix_reset() supports `state=0` for all states
- editing_ring() added
- unset now restores the default value for global settings
- load_traj now uses state=1 by default
- get_area command and dots representation: Exclude
“flag ignore” atoms
- no-o3.patch: adapt to 2.5.0
- spec file:
* some tweaks to adapt to 2.5.0
* remove test related stuff; test run commands are removed
from 2.5.0 as unmaintained and useless
* Wed May 19 2021 Steve Kowalik <steven.kowalik@suse.com>
- Remove the execute bit from some test scripts to remove a spurious
requirement.
* Sun Feb 21 2021 andy great <andythe_great@pm.me>
- Skip python3.6 because numpy no longer support it.
- Add mmtf-cpp-devel and use msgpackc.
- Attempt to get the test to run.
* Use _service to download pymol-testing for test data.
* Use bcond to enable/disable testing arguments.
* Pymol seems to need itself to test.
* Add %check section.
* Tue Sep 01 2020 Matej Cepl <mcepl@suse.com>
- Update to 2.4.0:
* load_traj
- support netcdf format
- support `selection` argument with all file formats
* CCP4/MRC Map Support
- Distinguish .ccp4 and .mrc extensions (regarding origin)
- .map extension: auto-detect the format
* New distance mode 8
* MMTF export: Consider `pdb_retain_ids` setting
* GLTF export (based on collada2gltf)
* New `internal_gui_name_color_mode` setting
* MPEG4 Movie export: Apply `movie_fps` setting to exported
file
* Python API
- Improved error handling with exceptions
- New: cmd.rebond()
- New: cmd.get_capabilities()
- Fix: cmd.get_bonds() state off by one
- cmd.fit() et al.: raise on error
* Launch Options
- Restore `-V` launch argument for external GUI height
- macOS: `open` event opens new window
* Sat Feb 01 2020 Stefan Brüns <stefan.bruens@rwth-aachen.de>
- Remove glew runtime dependency (only contains debug tools and
documentation).
- Remove freeglut build dependency (unused unless enabled with
'--glut' setup.py option).
- Use https for URL.
* Mon Feb 11 2019 Matej Cepl <mcepl@suse.com>
- Upgrade to 2.3.0:
* atom-level cartoon_transparency
* aln export for Nucleic Acids
* new API function: cmd.set_raw_alignment()
* fetch async=0 by default
* fast MMTF export (requires mmtf-cpp)
* new setting: seq_view_gap_mode
* Thu Jan 03 2019 opensuse-packaging@opensuse.org
- Update to version 2.2.0+git.1544795767.c481a7c1:
* fix SettingUniqueFromPyList w/ float3
* remove pymol::Image::Image(T&& vec, ...)
* refactor: pymol::Image tweaks
* rewrite "get_raw_alignment"
* refactor: pymol::vla::operator->() usage
* fix #16 pymol::vla::operator[] for VS2015 32bit
* fix pymol::vla::operator+ for VS2015
* pymol::Image::pixels()
* fix build
* fix macOS build
- Switch off msgpackc as we don't have mmtf-cpp packaged.
* Thu Aug 23 2018 tchvatal@suse.com
- Version update to 2.2.0:
* Switch devel links to github
* No finegraned news file see ChangeLog for commit info
- Rebase patch no-o3.patch
* Thu Aug 23 2018 tchvatal@suse.com
- Fix fdupes call
- Install license and docu files
* Wed Jun 06 2018 jengelh@inai.de
- Trim marketing words from description.
* Wed May 02 2018 tchvatal@suse.com
- Update to normal release that was released on 2018-03-19, 2 commits
changing tiny stuff compared to svn rev 4187
- Rename pymol to python-pymol to respect the packaging guidelines
- Fix qt5 devel python dependency to pull py3 and py2 both
- Obey system optflags instead of passing -O3
* no-o3.patch
* Tue Mar 13 2018 dhall@wustl.edu
- update to svn rev 4187
* PyQt interface (2.1.0)
* stick_round_nub for COLLADA export
* UTF-8 in feedback
* display_scale_factor (ported from Incentive PyMOL)
* dx map import: support "type float" and skewed delta
* new selection keywords: polymer.protein polymer.nucleic
* new command: multifilesave
* MMTF export (requires simplemmtf python module)
* select: present, state -1 -> current object state
* create: source_state = -1 -> current
(was: source_state = -1/0 -> all)
* cif: support quoted '?' and '.' as values
cif_get_array -> None instead of empty string for ? and .
* fix copy discrete object w/o coords
* fix loading pdbqr AutoDock 4 atom types
* fix get_model('none') and get_str('mol', 'none')
* h_add refactored: 5x faster, support discrete objects-
* Tue Jan 16 2018 dhall@wustl.edu
- update to svn rev 4184
* Python 3.7 support (https://sf.net/p/pymol/bugs/197/)
* enable align with alt-codes
- allow matching of non-alt-code to alt-code atoms in alignments
- swap sorting priority of 'name' and 'alt' identifiers
- sort empty 'alt' before non-empty 'alt'
* flags 6 and 7 for protein and nucleic acid
* mmCIF: read _atom_site.pdbx_formal_charge
* improve coordinate loading from mmcif chem_comp files
- ignore columns with all ? (missing) values
- select columns with "chem_comp_cartn_use" setting
* fix h_add: skip missing coordinates
* Python API: New "auto library mode". Automatically start a
non-GUI PyMOL instance if the pymol.cmd API is used without
running pymol.launch() first
* pdb_echo_tags for mmCIF and MMTF
* command parser: improve exception handling
* fix some PSE export memory leaks
* pymol2.cmd2: eliminate (non-weak) circular references
* movie making: reinterpolate after add_nutate/add_roll etc.
* support "module:callable" in loadfunctions/safefunctions
* yellow state indicator for discrete objects
* mpng modal draw improvements
* fix elements from .gro files (pymol/bugs/196, r4181 regression)
* save .mtl: raise exception
* Python 3:
- fix "GUI Font Size" dialog (pmw/bugs/47)
- fix COLLADA export
* some elements wrong from SDF and XYZ
* pse_export_version support with Python 3
* Fri Oct 20 2017 dhall@wustl.edu
- 1.9.0.0
* L > residues (oneletter)
* fix py3 crash in "A > copy to object"
* fix scene object visibility with hidden groups
* fix "ending" after loading movie session
* Wed Sep 20 2017 dhall@wustl.edu
- update to svn rev 4177
* expose "oneletter" to label/iterate
* sequence viewer: MSE=M SEC=U
* wire/licorice rep aliases
* menu: A > copy to object
* new commands: copy_to, uniquify
* fix slow 'extract' performance
* Wed Aug 16 2017 dhall@wustl.edu
- obsolete and provide pymol
* Fri Aug 04 2017 dhall@wustl.edu
- move to python singlespec
* Fri Aug 04 2017 dhall@wustl.edu
- 1.8.7.0
* support "not ..." and "enabled" in name patterns (e.g.: delete not enabled)
* improve/fix unicode+utf-8 handling for labels
* iterate color settings: type int (e.g.: iterate all, print(s.sphere_color))
* fix cmd.load with contents https://sf.net/p/pymol/mailman/message/35966326/
* fix ray tracing of stick_ball + valence https://sf.net/p/pymol/mailman/message/35928857/
* web.pymolhttpd -> pymol.pymolhttpd
Generic "web" name conflicts with webpy
https://sf.net/p/pymol/bugs/148/
* make build reproducible
https://sf.net/p/pymol/patches/12/
* delete obsolete packaging files
* internal command line: consistent behavior across platforms
* new "label" selection operator
* alter_state: remove restriction on x/y/z/flags
* iterate/label: expose "state" for discrete atoms
* CTRL+L drag/click -> move/center in 3-Button-Viewing mode
* auto-detect $PREFIX/share/pymol as $PYMOL_PATH
* locale LC_NUMERIC=C float parsing/formatting
* Python 3: fix wrong PyCapsule_New destructor
* PSE compatibility between Python 2 and 3
* Fri May 05 2017 dhall@wustl.edu
- 1.8.6.1 fixes
* Python 3.6 fixes
* Python 3: fix builder bond order buttons (Red Hat Bug 1442127)
* fix MAE export PDB residue/atom names
* restored "scene_animation" setting (1.7.6 regression)
* restored "import cmd" prevention (1.8.6.0 regression)
* Mon Mar 13 2017 dhall@wustl.edu
- remove explicity library dependency
* Mon Mar 13 2017 dhall@wustl.edu
- require libmsgpack
* Mon Mar 13 2017 dhall@wustl.edu
- 1.8.6.0 release
* mmtf: "ignore" flag for hetatm
* mmtf: msgpack version check
* INSTALL: env variables documentation
* Tcl/Tk menu updates
* fast MMTF load support in C++ (adds msgpack-c dependency)
* extra_fit: report RMS for method=cealign; Thanks to Hongbo Zhu
* CTRL-L ligand zoom
* preset > classified (auto_show_classified equivalent)
* preset > interface (ported from Incentive PyMOL 1.8.0)
* set_key auto-completion
* command completion for selection language
* fix connect_mode=4 for N-H1 and N-H3
* fix CGO ALPHA and dup COLOR issue
* width/height arguments for movie export (mpng, movie.produce)
* fetch: support "fetch EMD-3489"
* auto_show_classified -1 => 3 for 500k+ atoms
* pick_shading => surface_color_smoothing off
* cleanup: eliminate pymol.pymol_launch variable
* update molfile plugins to VMD version 1.9.3
* fetch 2fofc/fofc: update URLs, EDS will retire in 2017
* fix sf#102 pseudoatom multi-state problem
* editor.attach_amino_acid: fix PRO/N geometry
* avoid selection keyword name conflicts, append underscore
* load: allow format=plugin (by extension) and format=plugin:PLUGIN (with PLUGIN being a molfile plugin identifier)
* load format "vdb": VIPERdb PDB variant with retain_order=1
* load/load_traj: guess trajectory object
* fetch
* new setting "fetch_type_default"
* type=mmtf: fetch MMTF format
* type=2fofc/fofc: get spacegroup from PDBe API
* update download URLs
* new setting: editor_auto_measure
* new default: ray_transparency_oblique_power=4.0
* "update" command: support "current state" (-1)
* alter elem -> update protons and vdw
* don't allow "import cmd" (corrupts PyMOL namespace)
* support "python -m pymol" to launch PyMOL
* Thu Dec 01 2016 dhall@wustl.edu
- 1.8.4.0 release
* Thu Sep 29 2016 dhall@wustl.edu
- update to svn rev 4161
* pse_export_version: legacy scenes support
* use ignore_case setting with set_name command
* setup.py: detect anaconda prefix
* Thu Sep 22 2016 dhall@wustl.edu
- update to svn rev 4160
* experimental MMTF load support
* map export in CCP4 format
* SDF V3000 import/export support
* refactor molecular file formats export: Unified handling of PDB, PQR, mmCIF, MOL2, SDF, XYZ, MAE
* PLY geometry import (as CGO)
* new command: unset_deep
* new setting: cartoon_all_alt: Create cartoon for every alt code
* stick_h_scale: default=1.0 (was: 0.4) but remove dependency on negative stick_radius
* auto_show_classified: Visualize small (< 50 atoms) polymer classified molecules like organic
* bymol selection operator: ignore zero-order bonds
* menu: isomesh/surface negative color
* improve alignment of residues with unknown resn (e.g. ligands):
give a match score of 5 to perfect matches of unknown residue codes.
Previously, those got match score -1.
* remove broken and obsolete "PMO" file support
* use "label_digits" setting with "label" command
* do not resize window when loading a session file
* fix ignored SCALE w/ identity rotation (e.g. 1WAP)
* fix "scene auto, clear" (Scene > Delete)
* new setting: pick_shading: do flat shading for programmable image color analysis
* experimental cmd.raw_image_callback: post cmd.draw() callback
* Mon Jun 20 2016 dhall@wustl.edu
- update to svn rev 4159
* fix crash with ray tracing very large images
- use size_t instead of int for ray trace image buffer size
- correct image buffer size for antialias (was oversampled twice)
* fix crash with "align" and atoms without coordinates
* fix mutagenesis wizard "No Mutation" (update and rms commands)
* experimental FreeBSD support
* fix/silence various compiler warnings
* partly fixes sf#177, sf#178
* fix crash when loading PSE with bg_image_filenamefix ray trace memory limit; fix align crash
* Tue Apr 19 2016 dhall@wustl.edu
- update to svnrev 4155
* experimental setting "pse_binary_dump"
* get_sasa_relative (command ported from Incentive PyMOL)
* Color menu uses util.color_deep (ported from Incentive PyMOL)
* C > by rep (ported from Incentive PyMOL)
* fix crash when saving mesh PSE without map
* fix isosurface invalidation when setting surface_negative_visible
* new setting: collada_background_box (by Jared Sampson)
* improve unicode filename loading
* fix "unset" of non-numeric settings
* Mon Mar 21 2016 dhall@wustl.edu
- update to svnrev 4153/1.8.1.2
* new setting: auto_show_classified
* cartoon/ribbon: auto-detect CA-only models
* fix selection macros with wildcards and colon (:) residue ranges (1.8.0 regression)
* mmCIF: load missing residues independent of cif_use_auth setting
* fix pdb_insure_orthogonal for multi-model PDBs
* Mon Feb 08 2016 dhall@wustl.edu
- update to svnrev 4149
* restore ignore_case=on default
* new setting: ignore_case_chain (default off)
* new setting: cartoon_gap_cutoff
* increase PYMOL_MAX_THREADS
* amber topology loading: bond order 1 for all bonds
* improve MOL2 file handling
* new grid_mode=3: grid per object-state
* distance mode=4: distance between centroids
* byring: new selection operator
* "Distances to Rings" mode in measurement wizard
* basic atom typing for MOL2 export
* cartoon dash: new dashed loop-like cartoon type
* object-level settings for measurements
* iterate: use Python exceptions
* iterate_state: ignore atomic=0 (fixes crash)
* format 'xyzstr': enable .gz and URL loading
* fix crash with object sele length >= 1024
* re-add -Wno-write-strings
* fix pmg_tk.skins.normal.encode()
* fix askopenfilename CANCEL case with multiple=0
* support segi, resn and name of arbitrary string length
* expose settings to iterate/alter via "s.<name>"
* Python 3 compatibility for champ module
* apbs_tools: apply fixes from Pymol-script-repo
* Tested with Python 2.6, 2.7, 3.4
* fix crash with empty alignment object from PSE
* fix cartoon ray tracing crash
* fix xyz export and emd fetch
* backport to pre-c++11 for OS X <= 10.8
* Tcl/Tk Settings GUI: feedback, radio buttons
* default alignment_as_cylinders changed to off
* fix restore legacy scenes with spaces
* fix invalid write in ObjectGadgetRampUpdate
* Thu Nov 05 2015 dhall@wustl.edu
- update to svnrev 4139
* color autocomplete for ramps, improve volume blending
* new default: scene_buttons=on
* normalize_ccp4_maps=2 -> use mean and stdev from file header
* fix alignment with atoms w/o coords in a state
* new filetypes: pdbml, pdbqt, cml
* cell/symmetry: accept alpha=beta=gamma=0.0 as 90.0
* leave unknown protons as -1 instead of 0 (lonepair), fixes vdw assingment for unknown elements (1.8 instead of 0.5)
* reimplement reading full sequence from mmCIF. Only with cif_use_auth=off and retain_order=off. Fill in missing CA atoms for polypeptides.
* new API function cmd.get_object_ttt()
* APBS Plugin: --whitespace argument for pdb2pqr
* fix scene next/previous, was broken on Windows 10
* fix split_states with non-unique titles
* fix "File > Run" fails if path has spaces
* Wed Sep 30 2015 dhall@wustl.edu
- update to svnrev 4136
* cartoon_trace_atoms for sheets, fast connect_mode=4
* fix crash after headless ray tracing empty cartoon
* fix building on CentOS 6.3 / python2.6 / gcc 4.4.7
* cif_keepinmemory, pymol.querying.cif_get_array (experimental)
* ramp_update (new command)
* ramp objects now have "A > Range > ..." and "C > ..." menus
* mmCIF _chem_comp_atom: skip atoms with missing coordinates, prefer ideal over model coordinates
* cmd.set_key() decorator support
* fix isosurface all_states rendering
* pdb_hetatm_guess_valences for CIF loading
* mutagenesis wizard: improve "apply" performance
* fix measurement and alignment object partial PSE loading
* some load/save refactoring
* keep atom IDs when creating object from selection
* when renaming group "A" to "B", then also rename entry "A.X" to "B.X"
* Tue Jul 14 2015 dhall@wustl.edu
- update to svnrev 4131
* fix handling of _pdbx_struct_assembly_gen with repeated asym_id
* create assembly for multi-state objects
* no pdb_insure_orthogonal for assemblies
* fix "File > Run"
* some "const correctness" refactoring
* experimental pymol.querying.get_object_ttt
* fix assemblies for cases like 4f3r which have multiple entries in the
_pdbx_struct_assembly_gen table
* fix ref counts in iterate/alter subscripts
* improve side_chain_helper and nucleic_adic_mode situation
* eliminate all "try/catch" blocks for std::map lookups
* clean up some MemoryDebug stuff and remove unused jenarix wrapper
* some mmCIF bonding fixes
* Experimental: cmd.get_assembly_ids
* mmCIF: support "_atom_site.pdbe_label_seq_id"
* mmCIF: set "ignore" flag for HETATMSs (no surface)
* improve memory usage and performance of components.cif parsing
* fix https://sf.net/p/pymol/bugs/169/
* fetch 'cif' by default
* fix 5-letter cif-fetch
* fix mutagenesis wizard for ignore_case=0
* add some documentation
* port selection macro parsing to C
* side-effects for settings min/max
* warn if selecting with lower-case arguments
* fix "File > Open" from drive root on Windows
* std::array replacement for pre-C++11
* define NOMINMAX, fmax -> std::max
* correct setting-level handling in presets
* unset: restore default for string/float3/color, warn for int/bool/float
* fix "Display > Sequence" needs redisplay
* migrate seq_view_label_color=white from old PSE
* remove machine generated code from web/pymolhttpd.py
* fix segfault in read_pdbx_struct_assembly
* use snprintf instead of to_string (for c++0x)
* https://sourceforge.net/p/pymol/patches/10/
* change default (!) of "ignore_case" setting to off. Case insensitve
identifier matching is not pctical anymore with large structures
which use upper and lower case chain identifiers.
* new setting "assembly" to load assemblies from mmCIF as multi-state
objects with all_states=1
* new setting "cif_use_auth" controls whether mmCIF "auth" identifiers
are used or not (on by default)
* mmCIF "CA/P ATOMS ONLY" chains: set atom-level cartoon_trace_atoms
and ribbon_trace_atoms
* CIF discrete and irregular multi-model loading support
* support "pdb_honor_model_number" setting for CIF
* load multiple objects ("data_" blocks) from one CIF file (multiplex=-1)
* don't store AtmToIdx, DiscreteAtmToIdx or DiscreteCSet to PSE
(unless pse_export_version <= 1.76)
* make python2.6 compatible
* Tue May 05 2015 dhall@wustl.edu
- update to 1.7.6.0
* fix crash when loading malformed CIF file
* cif export fix for natoms = 0
* ignore SCALE matrices with negative determinant
* fix memory leaks with iterate/alter
* fix crash when saving PSE with deleted ramp
* VASP file support for: CHGCAR, OUTCAR, POSCAR, XDATCAR
* psf file support
* fix several memory leaks
* fix memory leak in get_global_components_bond_dict
* new setting: pse_export_version to save to old session formats
* change default: pdb_conect_nodup 0 -> 1
* sphere_mode=-1 -> 9 if shaders available else 0
* fix Tcl/Tk File menu unicode handling
* scenes: Restore the old behavior that when recalling a scene, all objects
which were not present when storing the scene are disabled.
* fix auto-complete for filenames with spaces
* fix an object menu panel group ordering problem
* remove unused variables (Partly applies https://sourceforge.net/p/pymol/bugs/166/)
* lots of: char* -> const char*
* remove inline Parse functions, simplify ParseFloat3List
* make functions static
* mmCIF: support CHEM_COMP_BOND from mmCIF file
* residue information for MOL2 export
* find > polar contacts > between chains
* keep initial scene when restoring legacy scenes
* remove static PFNGL* function declarations
https://sourceforge.net/p/pymol/bugs/165/
* removed obsolete code and settings: use_display_lists, simplify_display_lists, excl_display_lists_shaders
* rename _PYMOL_OPENGL_SHADERS -> _PYMOL_ARB_SHADERS
* SingletonPyMOLGlobalsNULL.patch
* https://sourceforge.net/p/pymol/bugs/162/
- Free ShaderMgr after Scene
- check (G != NULL) in MainOnExit
* https://sourceforge.net/p/pymol/bugs/161/
apply clang logical-op-parentheses suggestion
* more `const char *` arguments refactoring
* fixed roving density and roving detail demos (regression from last commit)
http://sourceforge.net/p/pymol/bugs/156
* fix "narrowing conversion" C++ errors
* removed unused code and preprocessors:
_PYMOL_GL_DRAWARRAYS
_PYMOL_GL_CALLLISTS
_PYMOL_CGO_DRAWARRAYS
_PYMOL_CGO_DRAWBUFFERS
OPENGL_ES_1
OPENGL_ES_2
* removed deprecated "register" specifier
* mmCIF _atom_sites.fract_transf support (SCALEn equivalent)
* Complete port of scenes to C++
* warn user if setting a setting on the wrong level
* cmd.extendaa: shortcut for cmd.extend with argument auto-completion
* reduced memory footprint of AtomInfoType
* expose "reps" to iterate/alter
* expose "protons" to iterate/alter
* adaptive cartoon quality and sampling, depending on number of atoms
* fix ring center color with cartoon_ring_color=default
* make SelectorGetTmp strictly molecular, fixes for example "dss" with group names
* fix "copy" can cause crash
* fix "custom" selection operator
* consider spec_count in shaders
* don't invalidate shaders for lighting settings
* don't disable shaders for all Intel chips
* don't touch sphere_mode when disabling shaders
* map_new buffer == -1 -> gaussian_resolution
* fix all_states picking
* remove cylinder_shader_ff_workaround and cylinders_shader_filter_faces
* remove unused gl_ambient setting
* fix Tcl/Tk menu settings logging
* fix: grid mode scales down label size incorrectly
* fix: no animate argument for cmd.origin
* fix side_chain_helper for hetatm polymer atoms
* fix .mmd export
* refactor many function to take "const" pointer arguments
* Thu Mar 12 2015 dhall@wustl.edu
- update to svn rev 4108
* Fix error with multiple open "Save Molecule" dialogs
* https://sourceforge.net/p/pymol/mailman/message/33286949/
* fix windows build, PRIu64
* cmd.as -> cmd.show_as in old test files
* remove obsolete pymol2/make_cmd2.py
* Mon Jan 05 2015 dhall@wustl.edu
- update to svn rev 4107
* elimination of more compiler warnings
* silence numpy deprecation warnings (NPY_1_7_API_VERSION)
* fix cif export with multiple objects
* glutLeaveFullScreen: fix for freeglut < 2.6 and < 2.8
* Thu Dec 04 2014 dhall@wustl.edu
- update to pymol 1.7.4.0
* use COMPONENTS_CIF environment variable to look for components.cif
* update fetchHosts and hostPaths URLs
* change order of mmCIF _atom_site columns on export
* use _atom_site.label_asym_id as segi
* cif: read first_model_num
* fixed _foo?bar lookup could fail in mmCIF parsing
* deprecated full_screen setting (use full_screen command)
* fix collada_* settings in pymol.settings
* fix apbs_tools for tcl/tk 8.6
* fix fullscreen on OSX w/ GLUT
* silence compiler warnings
* Thu Oct 30 2014 dhall@wustl.edu
- add libxml dependencies
* Mon Oct 20 2014 dhall@wustl.edu
- update to svn rev 4098
* setup.py and plugin manager fixes
- thanks to Justin Lecher for the bug reports
* COLLADA (dae) export support
- Implemented by Jared Sampson as his POSF project.
* fast CIF loading, 1.7.3.1 (unstable/experimental)
* fast PDBx/mmCIF and core CIF loading in C++
* new connect_mode=4 does bonding with components.cif dictionary
(mmCIF only, components.cif needs to be present in current
directory)
* gray out residues in the sequence viewer that are missing from the
current state; Read missing residues from mmCIF files
(_pdbx_unobs_or_zero_occ_residues records) so that they show up in
the sequence viewer
* add spider map reading support
* load "map" as ccp4 instead of throwing "ambiguous" error
* xyz write support
* Improve right-button zoom: use origin instead of clipping slab
center as depth indicator, fixes zoom speed when far clipping plane
is very far away
* don't use dynamic_width for nonbonded rep
* Wed Oct 01 2014 dhall@wustl.edu
- update to svnrev 4095
* delete obsolete layer*/Makefile.*
* ignore SCALEn if CRYST1 is 1x1x1 or invalid
* new/refactored API functions for accessing coordinates and maps as numpy arrays
* new API function: cmd.set_state_order
* Session file (PSE) support for callback objects
* fix/silence many compiler warnings
* fix bg_rgb_top/bg_rgb_bottom side effects
* revert "fix setting surface_circumscribe"
* delete some obsolete files
* Mon Sep 15 2014 dhall@wustl.edu
- update to svnrev 4093
* fix ObjectMoleculeCopy lex ref counting
* added missing function pymol.menu.measurement_color
* multi-letter chain support
* c++ for all PyMOL c files
- renaming files c -> cpp
- c++ specific syntax (::)
* Mon Aug 25 2014 dhall@wustl.edu
- update to svnrev 4088
* port pdb_conect_nodup to open-source PyMOL
* reimplement volume carving
- use a carve mask texture
* fix boxed volume around selection (with or without carving)
- this only worked for symmetry expanded volumes
- still limited to maps with symmetry information (TODO)
* removed ObjectVolumeGetIsUpdated, deprecate get_volume_is_updated
* refactored ObjectVolumeStateGetField, ObjectVolumeGetField
- don't keep a redundant vs->volume copy in memory
* revert a 1.7.2 opaque_background change
- real-time rendering background was always black with
opaque_background=0
- removes opaque_background support for "draw"
* Fri Aug 08 2014 dhall@wustl.edu
- update to svnrev 4086
* chempy.cif: fix symmetry loading
* Improve ObjectVolume rendering latency
* Improve label edge pixel rounding
* alter_state auto completion
* improve "Label" wizard
* re-implemented ObjectMoleculeSetDiscrete
* fix ObjectMoleculeSetDiscrete for empty molecules (crashed PyMOL)
regression by rev 4083
* fix mutagenesis bump_scores error: after apply or clear, bump_scores must be cleared
regression by rev 4081
* improve "Label" wizard
* re-implemented ObjectMoleculeSetDiscrete
* fix label_digits crash
* fixed get_angle3f to use doubles internally
* avoid ZeroDivisionError in Volume Panel
* support opaque_background with "draw"
* fix spheroid command for use_shaders=0
* report clash score in mutagenesis wizard
* change defaults for settings "ribbon_as_cylinders" and
"nonbonded_as_cylinders" to 0
* new commands (ported from PSICO): join_states, alphatoall, loadall,
centerofmass, extra_fit, api
* pubchem and emd fetch support
* support to run pml and py script with the "load" command
* Fix text mode (text=1) with white background color
* Fri Jun 27 2014 dhall@wustl.edu
- update to svnrev 4080
* chempy.cif: don't bond metalc and hydrog
* chempy.cif: fix copy/paste typo in read_struct_conn_
* better CIF support, etc.
* refactor chempy.cif
- support for multi-model
- read secondary structure
- rewritten tokenizer
* atom sorting: make segi match case sensitive
* fix/improve:
A > compute > surface area > ...
A > generate > selection > surface atoms
* PDB parser: factor out SS handling for readability
* open file dialog in CWD until the first file was selected, then
remember that directory
* with -J immediatly cd to $HOME (or $HOME/Documents on Windows).
This allowes to put a "cd ..." in pymolrc
* fix stereo shader invalidation
* add missing header
* Wed May 14 2014 dhall@wustl.edu
- update to svn rev 4076
* fix label depth issues with label_position
* fix label reappeared when zoomed in too far
* fix "scene auto, update" with wizard message
* fix setting surface_circumscribe
* volume improvments:
- grid_mode support
- adjust volume ramp alphas by number of layers
- support TTT matrix
- bind mouse wheel to volume panel to adjust all alphas at once
* CCP4 map type 0 support
* fixed polymer detection for intra-residue N->C and O3'->P bonds
* raise exception when assigning arbitrary string to int setting
* fix group visibility issue in movie making
* Thu Apr 24 2014 drhall@bu.edu
- update to svn rev 4074
* never assign atom_type (noInvalidateMMStereoAndTextType)
* fix ExecutivePurgeSpec memory leak
* fix cartoon memory leak
* fixed small solvent_radius crashes surface generation
* Thu Mar 13 2014 dhall@wustl.edu
- update to svn rev 4073
* fix CGO ALPHA should not make colors get ignored
* volume API and panel improvements
* volume presets
* new commands: volume_color, volume_ramp_new
* improved volume panel/UI
* custom volume ramps/presets
* support for volumes from maps with transformation matrix (matrix_copy on map)
* fix distorted labels with stereo walleye/crosseye
* fix broken label scaling on Linux
* update splash
* bugfix: labels missing on some ATI cards
* th_assert -> ok_assert
* fix typo in menu: isolevel -1.5
* set PYMOL_PATH=. if unknown and cannot be guessed
* use PYMOL_DATA in ShaderMgr
* remove some old code in pymol/__init__.py
* http://sourceforge.net/p/pymol/bugs/147/
* add method chempy.brick.Brick.from_numpy
* mutagenesis wizard: use PYMOL_DATA
* fix pymolrc lookup on Windows from users home directory broken
* read space group from CCP4 maps
* handle empty space group like P1 (for best support of map formats
which do not have a space group)
* map_auto_expand_sym: take symmetry from map if molecular object
doesn't have symmetry information
* gracefully reject writing MOL format with >999 atoms
* fix: saving MOL2 format with empty atom name
* fix: ray+png in batch mode ray traces twice
* disable seq_view in mpng
* change movie_quality default to 90 (was 60)
* fix needs_alpha_reset
* apbs_tools PDB writing: disable putting spaces before dashes
* Sat Jan 04 2014 dhall@wustl.edu
- update to svn rev 4058
* fix ramp coloring when loaded from PSE
* don't set use_shaders with PSE or reinitialize
* delete duplicates when loading PSE w/ partial=1
* fix incomplete CGO loading from session file
* fix viewport logging syntax error
* fixed typo in RepDihehral "ok &+" -> "ok &="
http://sourceforge.net/p/pymol/bugs/146/
* fix warnings about unused data argument
* submenus can be callables which return a list
* fix antialiasing internal edges, ray tracing
* fix clicking volume panel dots at zero alpha
* fix molecular weight w/ aromatic bonds & missing hydrogens
* fixed sequence text/background when scrollbar isn't shown
* remove deprecated mray command
* Fri Dec 06 2013 dhall@wustl.edu
- update to svn rev 4053
* remove self assignments
http://sourceforge.net/p/pymol/bugs/143/
* cmd.load_callback: import fixed version to api
* don't sort atoms in discrete objects
* fix resizing issue for lines on ATI cards
* fix reset stereo with reinitialize
* fix draw stereo
* fix label shader fog blending
* Mon Nov 11 2013 dhall@wustl.edu
- update to svn rev 4051
* fix segfault in SceneImagePrepareImpl
* fix dihedral rep for objects with >20 states
* cmd.png: consider image_dots_per_inch with _unit2px
* preset.py: delete temporary selections
* fixed CGO demo crash in CGOSimplify
* print OpenGL info not only to STDOUT, but to PyMOL text output
* fix tcl/tk window placement on OS X 10.9
* get_viewport: do not print int as float
* fix: do not set wiz.cmd to None when saving PSE
* fix cartoon picking bug
* fix crash during selection
* fix two_sided_lighting cartoon shader bug
* fix isolevel command for isosurface with shaders
* mol2 writing with multiple objects
* fix removing non-polar hydrogens
* fix crash during select bychain
* fixed line_as_cylinder bug
* fixed smooth half bonds with line as cylinders
* get_bond command
* Mon Nov 11 2013 dhall@wustl.edu
- Add no-build-date.patch : eliminates build date in executable
* Mon Nov 11 2013 dhall@wustl.edu
- update to svn rev 4050
* fix splash.png sRGB profile, https://sourceforge.net/p/pymol/bugs/136/
* fix get_setting_updates
* improve Filter Wizard, "Create Filtered Object"
* consider "ignore_pdb_segi" setting when saving to PDB
* delete obsolete files (sglite, ExtensionClass)
* some C code refactoring
* remove out-dated pymol.opengl module
* enhance get_version command, quiet=-1 gives build information
* remove max_triangles setting (was unused)
* fcmp equals operator approximate match
* fix Tcl/Tk save multiple to one file
* Mon Oct 07 2013 dhall@wustl.edu
- Drop setup.patch: upstream fixed bug
- update to svn rev 4045
* fix setup.py sys.argv
* Sat Oct 05 2013 dhall@wustl.edu
- update to svn rev 4044
* fix segfault in OrthoRenderCGO https://sourceforge.net/p/pymol/bugs/137/
* importing.load_coords
* improve util.chainbow
* fix plugin manager PyMOLWiki URL install: strip whitespace
* major re-work/organization of RepSphere.c and fixed sphere picking
* fix color type settings return format for hex colors (0x prefix)
* fix special keys in wizard input prompt
* Mon Sep 09 2013 dhall@wustl.edu
- update to svn rev 4042
* add "x" "y" "z" selection operators
* fix seq viewer background color
* add "backbone" and "sidechain" selection keywords
* fix: cealign inverts target structure
* fix [bugs:#135] array overrun
* apply one part of [patches:#6]
* preserve "use_shaders" setting when loading session files
* simplify pymolrc search routine
* fix CtSh-M click on group members in object menu panel
* set_key string support
* Fri Aug 23 2013 dhall@wustl.edu
- Add setup.patch: Makes pymol build using standard distutils commands
- update to svn rev 4039
* fix h_add atom sorting
* add "metals" keyword to selection language
* improve amber rst/crd support
* fix pair_fitting with one atom pair
* setup.py: add --osx-frameworks agument
* rpc server: use register_instance
* fix numpy/ndarrayobject.h import
* Wed Jul 17 2013 dhall@wustl.edu
- update to svn rev 4035
* fixed load_traj with stop/max arguments. Thanks to David Osguthorpe for the patch.
* fix pymol.importing.read_mmodstr
* proper numpy support (ObjectMap.c)
* take out broken experimenting.expfit
* fetch_path: graceful error handling when writing file fails
* fixed flickering ortho problems on some machines
* Thu Jun 27 2013 dhall@wustl.edu
- update to svn rev 4033
* fixed selection indicators
* invalidation of selection indicators when selections change
* wrong sized selection indicators are shown after zoom
* Tue Jun 18 2013 dhall@wustl.edu
- update to svn rev 4032
* fixed loading in bg_rgb settings from old project pse files
* add URL support for run command
* some setup.py adjustments
* fixed labels when use_shaders is 0 and show_frame_rate is on
* update APBS Tools plugin
* fix spectrumany when minimum/maximum are provided
* Wed Jun 12 2013 dhall@wustl.edu
- PyMOL v1.6.0.0 Release
* freeing VBOs properly when deleting volumes
* added quiet flag for SettingGenerateSideEffects() and SettingCheckUseShaders()
* fix 15bit color picking
* fix surface memory leak
* fix CGO demo
* internal.file_read: use urllib2 instead of urllib
* fix ellipsoid transparency OpenGL rendering
* Tue Jun 04 2013 dhall@wustl.edu
- update to sven rev 4029
* fix Scripts ending with ...pymol.py do not execute
https://sourceforge.net/p/pymol/bugs/46/
* several CGO fixes
* several python fixes
* Fri Apr 26 2013 dhall@wustl.edu
- update to svn rev 4028, pymol 1.6beta1
* refactored importing.fetch
* spectrum enhancements (arbitrary expressions and colors)
* pymol2.cmd2: implement proxy pattern
* chempy model improvements
* fix bg_color, which sometimes did not apply instantly
* Mon Apr 22 2013 dhall@wustl.edu
- update to svn rev 4027
* support full path for "matrix" argument
https://sourceforge.net/p/pymol/patches/4/
* use PyMOL API in pymol.rpc module
https://sourceforge.net/p/pymol/patches/3/
* doc string for cmd.find_pairs
https://sourceforge.net/p/pymol/patches/2/
* rotate ANISOU vector when transforming objects
* new command: split_chains
* fix create/extract bug with movie
* fixed cartoon VBO memory leak
* always draw rounded caps with sticks shaders
* several shader fixes and performance improvements
* fixed screen z-offset for labels
* Mon Apr 22 2013 dimstar@opensuse.org
- Add freetype2-devel: the source #includes ft2build.h, so it's
only correct to build require it.
* Sun Mar 24 2013 dhall@wustl.edu
- version bump: pymol 1.6
* improved rendering performance using shaders, including
dynamically updated shaders based on settings
(see data/shaders directory)
* implemented shaders for menus, labels, selection indicators,
background, and other graphics that were not using shaders.
* consolidated textures used for labels and selection indicators
to one texture, which helps performance
* added memory checking to help avoid crashing when memory is
low or not available
* cleaned up code base, took out extraneous preprocessor code and
code that was not used.
* refactor pmg_tk.Settings
* Do not clear atom names with chempy.champ.assign.amber99
* fix some plugin manager exception handling
* fix create with name=None
* Plugin override search path: Always include "startup"
from installation directory in plugin search path
* Movie > Program > Scene Loop > Nutate > by degrees
* ObjectMeshRenderImpl refactoring: color isomesh and isodot with
mesh_color and dot_color settings
* merging alignment objects: eliminate orphaned atoms
* fix cealign alignment object creation: rms_cur arguments swapped
* improved the alignto command to take additional keyword arguments
which get passed to the used method -> object=aln supported now
* remove _PYMOL_MODULE constant
* fix LITERAL mode command parsing: ignore leading whitespace
* Wed Mar 20 2013 dhall@wustl.edu
- update to svn rev 4023
* setup.py: unify Linux and Mac platform-specific stuff
* disable shaders for nouveau driver
* setup.py: add support for incremental build
* add missing file "qmplugin.h"
* Sat Feb 16 2013 dhall@wustl.edu
- update to svn rev 4020
* enable VMD plugins by default
* apply patch #120 "pymol" import in launcher ambiguous
http://sourceforge.net/p/pymol/bugs/120/
* always import _cmd from pymol or pymol.cmd instead of relative
* add bz2 support for reading PDB and some other file formats
* support width/height units with the png command
* support decorator syntax for cmd.extend
* setup.py refactoring, setup2.py no longer needed
* Exit on error with "-y" flag
* shortcut and auto-completion refactoring
* fix setting angle_color or dihedral_color
* ramp_new: exception handling on argument parsing
* feedback fixes
* speed up iterate and alter - https://sourceforge.net/p/pymol/patches/5/
* command line (Tk GUI) history improvements
* add angles to the Movie-Program-SceneLoop menu
* Fixed fab hydro argument
* Fixed #3539436: right justified resn in PDB
* Fixed #3506103: alignment objects from "super" do not contain N atoms
* Fixed #3496006: END before ENDMDL bug reintroduced
* Thu Aug 16 2012 dhall@wustl.edu
- update to svn rev 4005
* Fixed longstanding annoyance: 'as rep, vis' now works
* Added autocomplete for 'group' command.
* Adding autocomplete for 'dss'.
* Fixed bug where FASTA strings aren't returned for multiple objects.
* Sun Jun 10 2012 dhall@wustl.edu
- update to svn rev 4001
* FIXED: fails to align chains of length < 2*window+1
* FIXED: if chain length is a multiple of window, only (length-window) residues get aligned
* FIXED: only evaluates every 2nd path of the best 20 (increments k twice in the loop)
* FIXED: if no alignment is found, the return value is NULL which raises a SystemError instead of a graceful error message.
* FIXED: finally, it's not possible to obtain the alignment as an object (like with align ..., object=aln)
* FIXED: fixed auto complete names on for cealign
* Fixing the exception handling of get_names_of_type
* Fixing get_unused_names
* Fixing locking on get_names_of_type
* Sat May 05 2012 dhall@wustl.edu
- Adding checks for Quadro cards
- Improved Plugin Manager; Thomas Holder's PyMOL OSFP project
* Fri Apr 13 2012 dhall@wustl.edu
- update to svn rev 3996
* Fixed ID: 3512313 TER records before residues like MSE, patch submitted by Thomas Holder
* Fixed ID:3513708, cmd.get_unused_name fix; thanks to Thomas Holder
* Default all Intel cards to not use shaders
* Tue Mar 06 2012 dhall@wustl.edu
- update to svn rev 3993
* fixed crash when reading in long lines from stdin
- update to 1.5.0.3
* fixed error showing Cell on map with attached file
* fixed reading in symmetry
* fixed problem with symmetry copying/setting where map doesn't get updated
* get_symmetry should return None if argument is not an ObjectMolecule or ObjectMap
* fixed Volume extents only get shown when volume is rendered
* fixed reading in legacy sessions with version # less than 1
* Sat Feb 18 2012 dhall@wustl.edu
- update to 1.5.0.2
* stack trace when saving movie as MPEG (ID: 3488608)
* error loading from pse that don't have Crystal/Symmetry info (ID: 3488609)
* Mon Feb 13 2012 dhall@wustl.edu
- update to 1.5.0.1 release
* improved rendering Performance
* improved rendering Quality
* bg_gradient now ray traces
* improved cartoon support for non-standard nucleotides
* surface color smoothing
* surface-based picking
* frame buffer-based antialiasing for real-time rendering
* optimized anaglyph colors and intensities for an improved 3D
viewing experience
* real-time and ray-traceable ambient occlusion
* molecular weight calculuations; A > Compute > Molceular Weight
* selection generation A > Generate > Selection
* new mouse mode for repositioning lights
* many bug fixes
* Fri Feb 10 2012 cfarrell@suse.com
- license update: Python-2.0
Use the SPDX identifier (http://www.spdx.org/licenses)
* Wed Jan 04 2012 dhall@wustl.edu
- update to svn rev 3975
* improved callback rendering
* fixed object creation when merging two objects
* fixed get_mass
* fixed create to reorder IDs when combining objects
* Cleaned up 'fitting.py'
* alignto updated; can now take a method for alignment
* cealign updated; made faster and cleaner
* Fri Oct 14 2011 dhall@wustl.edu
- update to svn rev 3971
* Added the get_viewport function and updated the viewport function
* Added support for some non-standard nucleic acids (PSU)
* Mon Oct 03 2011 dhall@wustl.edu
- update to svn rev 3969
* PyMOL now respects the h_bond_from_proton setting
* Doc fixes
* Added Display > Roving Detail
* Removed AttributeError on coloring volumes
* Added polar contacts/hydrogen bonds to the measurement wizard
* Fixed distance invalidation problem
* Fri Sep 16 2011 dhall@wustl.edu
- update to svn rev 3965
* Fixed a conversion bug in util.cbc; thanks Hongbo.
* Added A > Compute > Molecular Weight and cleaned up the compute menu in general
* Fixed click-flash that happens when middle-clicking when showing the background
gradient (thanks, Blaine)
* Added A > Generate > Selection > polar, non_polar, acceptor/donator options
* Fri Aug 05 2011 dhall@wustl.edu
- update to svn rev 3962:
* code cleanup
* fix opengl from python
* read and importing fixes
* Thu Jul 07 2011 dhall@wustl.edu
- Small state bugfix
- Feedback bugfix
- Updated TNT to 3.0b
* Sun Jul 03 2011 saschpe@gmx.de
- Spec file cleanup:
* Added proper license header
* Removed authors from description
* Fri Jun 17 2011 dhall@wustl.edu
- have just one package rather than pymol+python-pymol, maybe chempy
will split out later
* Thu Jun 16 2011 dhall@wustl.edu
- update to svn version 3955
- fixed stick coloring
- fixed save mol file
- fixed shading/fog
- fixed volume shaders
- supress guess valences
* Thu Jun 02 2011 dhall@wustl.edu
- update to svn version 3951
- fix clipped group names
- much faster ribbons
* Tue May 10 2011 dhall@wustl.edu
- move pymol_path stuff into python module
* Tue May 10 2011 dhall@wustl.edu
- fix dependencies
- mark file as executable
* Tue May 10 2011 dhall@wustl.edu
correct separation between pymol and python-pymol-
* Tue May 10 2011 dhall@wustl.edu
Initial checkin of pymol 1.4.1-
/etc/alternatives/pymol /usr/bin/pymol /usr/bin/pymol-3.13 /usr/lib64/python3.13/site-packages/chempy /usr/lib64/python3.13/site-packages/chempy/__init__.py /usr/lib64/python3.13/site-packages/chempy/__pycache__ /usr/lib64/python3.13/site-packages/chempy/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/arc.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/arc.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/bond_amber.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/bond_amber.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/bond_mmff.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/bond_mmff.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/bonds.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/bonds.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/brick.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/brick.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/cc1.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/cc1.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/charge.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/charge.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/cif.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/cif.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/cpv.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/cpv.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/dictdb.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/dictdb.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/gamess1.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/gamess1.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/gms.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/gms.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/hetatm.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/hetatm.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/io.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/io.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/lst.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/lst.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mae.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mae.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/map.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/map.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mass.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mass.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mmd.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mmd.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/models.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/models.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mol.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mol.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mol2.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/mol2.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/neighbor.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/neighbor.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/pdb.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/pdb.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/pkl.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/pkl.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/place.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/place.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein_amber.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein_amber.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein_amber99.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein_amber99.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein_mmff.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein_mmff.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein_residues.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/protein_residues.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/sdf.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/sdf.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/solvate.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/solvate.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/water_amber.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/water_amber.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/water_residues.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/water_residues.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/xyz.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/__pycache__/xyz.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/arc.py /usr/lib64/python3.13/site-packages/chempy/bmin /usr/lib64/python3.13/site-packages/chempy/bmin/__init__.py /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__ /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/commands.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/commands.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/realtime.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/realtime.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/state.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/state.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/util.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/__pycache__/util.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/bmin/commands.py /usr/lib64/python3.13/site-packages/chempy/bmin/realtime.py /usr/lib64/python3.13/site-packages/chempy/bmin/state.py /usr/lib64/python3.13/site-packages/chempy/bmin/util.py /usr/lib64/python3.13/site-packages/chempy/bond_amber.py /usr/lib64/python3.13/site-packages/chempy/bond_mmff.py /usr/lib64/python3.13/site-packages/chempy/bonds.py /usr/lib64/python3.13/site-packages/chempy/brick.py /usr/lib64/python3.13/site-packages/chempy/cc1.py /usr/lib64/python3.13/site-packages/chempy/champ /usr/lib64/python3.13/site-packages/chempy/champ/__init__.py /usr/lib64/python3.13/site-packages/chempy/champ/__pycache__ /usr/lib64/python3.13/site-packages/chempy/champ/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/champ/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/champ/__pycache__/amber99.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/champ/__pycache__/amber99.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/champ/__pycache__/assign.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/champ/__pycache__/assign.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/champ/__pycache__/formal_charges.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/champ/__pycache__/formal_charges.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/champ/_champ.cpython-313-powerpc64le-linux-gnu.so /usr/lib64/python3.13/site-packages/chempy/champ/amber99.py /usr/lib64/python3.13/site-packages/chempy/champ/assign.py /usr/lib64/python3.13/site-packages/chempy/champ/formal_charges.py /usr/lib64/python3.13/site-packages/chempy/charge.py /usr/lib64/python3.13/site-packages/chempy/cif.py /usr/lib64/python3.13/site-packages/chempy/cpv.py /usr/lib64/python3.13/site-packages/chempy/dictdb.py /usr/lib64/python3.13/site-packages/chempy/fast /usr/lib64/python3.13/site-packages/chempy/fast/__init__.py /usr/lib64/python3.13/site-packages/chempy/fast/__pycache__ /usr/lib64/python3.13/site-packages/chempy/fast/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/fast/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/fragments /usr/lib64/python3.13/site-packages/chempy/fragments/__init__.py /usr/lib64/python3.13/site-packages/chempy/fragments/__pycache__ /usr/lib64/python3.13/site-packages/chempy/fragments/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/fragments/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/gamess1.py /usr/lib64/python3.13/site-packages/chempy/gms.py /usr/lib64/python3.13/site-packages/chempy/hetatm.py /usr/lib64/python3.13/site-packages/chempy/io.py /usr/lib64/python3.13/site-packages/chempy/lst.py /usr/lib64/python3.13/site-packages/chempy/mae.py /usr/lib64/python3.13/site-packages/chempy/map.py /usr/lib64/python3.13/site-packages/chempy/mass.py /usr/lib64/python3.13/site-packages/chempy/mmd.py /usr/lib64/python3.13/site-packages/chempy/mmtf /usr/lib64/python3.13/site-packages/chempy/mmtf/__init__.py /usr/lib64/python3.13/site-packages/chempy/mmtf/__pycache__ /usr/lib64/python3.13/site-packages/chempy/mmtf/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/mmtf/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/mmtf/__pycache__/io.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/mmtf/__pycache__/io.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/mmtf/io.py /usr/lib64/python3.13/site-packages/chempy/models.py /usr/lib64/python3.13/site-packages/chempy/mol.py /usr/lib64/python3.13/site-packages/chempy/mol2.py /usr/lib64/python3.13/site-packages/chempy/neighbor.py /usr/lib64/python3.13/site-packages/chempy/pdb.py /usr/lib64/python3.13/site-packages/chempy/pkl.py /usr/lib64/python3.13/site-packages/chempy/place.py /usr/lib64/python3.13/site-packages/chempy/protein.py /usr/lib64/python3.13/site-packages/chempy/protein_amber.py /usr/lib64/python3.13/site-packages/chempy/protein_amber99.py /usr/lib64/python3.13/site-packages/chempy/protein_mmff.py /usr/lib64/python3.13/site-packages/chempy/protein_residues.py /usr/lib64/python3.13/site-packages/chempy/sdf.py /usr/lib64/python3.13/site-packages/chempy/solvate.py /usr/lib64/python3.13/site-packages/chempy/tinker /usr/lib64/python3.13/site-packages/chempy/tinker/__init__.py /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__ /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/amber.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/amber.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/keyword.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/keyword.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/realtime.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/realtime.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/state.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/__pycache__/state.cpython-313.pyc /usr/lib64/python3.13/site-packages/chempy/tinker/amber.py /usr/lib64/python3.13/site-packages/chempy/tinker/keyword.py /usr/lib64/python3.13/site-packages/chempy/tinker/realtime.py /usr/lib64/python3.13/site-packages/chempy/tinker/state.py /usr/lib64/python3.13/site-packages/chempy/water_amber.py /usr/lib64/python3.13/site-packages/chempy/water_residues.py /usr/lib64/python3.13/site-packages/chempy/xyz.py /usr/lib64/python3.13/site-packages/pmg_qt /usr/lib64/python3.13/site-packages/pmg_qt/TextEditor.py /usr/lib64/python3.13/site-packages/pmg_qt/__init__.py /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__ /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/TextEditor.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/TextEditor.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/advanced_settings_gui.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/advanced_settings_gui.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/builder.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/builder.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/file_dialogs.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/file_dialogs.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/keymapping.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/keymapping.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/mimic_pmg_tk.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/mimic_pmg_tk.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/mimic_tk.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/mimic_tk.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/properties_dialog.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/properties_dialog.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/pymol_gl_widget.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/pymol_gl_widget.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/pymol_qt_gui.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/pymol_qt_gui.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/scene_bin_gui.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/scene_bin_gui.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/shortcut_menu_gui.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/shortcut_menu_gui.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/volume.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/__pycache__/volume.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/advanced_settings_gui.py /usr/lib64/python3.13/site-packages/pmg_qt/builder.py /usr/lib64/python3.13/site-packages/pmg_qt/file_dialogs.py /usr/lib64/python3.13/site-packages/pmg_qt/forms /usr/lib64/python3.13/site-packages/pmg_qt/forms/__init__.py /usr/lib64/python3.13/site-packages/pmg_qt/forms/__pycache__ /usr/lib64/python3.13/site-packages/pmg_qt/forms/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/forms/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/forms/askpartial.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/change_confirm.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/colors.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/create_shortcut.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/fetch.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/help_shortcut.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/load_aln.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/load_mae.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/load_map.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/load_mtz.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/load_traj.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/movieexport.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/pluginitem.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/pluginmanager.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/png.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/props.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/render.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/save_molecule.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/save_object.ui /usr/lib64/python3.13/site-packages/pmg_qt/forms/shortcut_menu.ui /usr/lib64/python3.13/site-packages/pmg_qt/keymapping.py /usr/lib64/python3.13/site-packages/pmg_qt/mimic_pmg_tk.py /usr/lib64/python3.13/site-packages/pmg_qt/mimic_tk.py /usr/lib64/python3.13/site-packages/pmg_qt/properties_dialog.py /usr/lib64/python3.13/site-packages/pmg_qt/pymol_gl_widget.py /usr/lib64/python3.13/site-packages/pmg_qt/pymol_qt_gui.py /usr/lib64/python3.13/site-packages/pmg_qt/scene_bin_gui.py /usr/lib64/python3.13/site-packages/pmg_qt/shortcut_menu_gui.py /usr/lib64/python3.13/site-packages/pmg_qt/syntax /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__init__.py /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__pycache__ /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__pycache__/pml.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__pycache__/pml.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__pycache__/pmlparser.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__pycache__/pmlparser.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__pycache__/python.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_qt/syntax/__pycache__/python.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_qt/syntax/pml.py /usr/lib64/python3.13/site-packages/pmg_qt/syntax/pmlparser.py /usr/lib64/python3.13/site-packages/pmg_qt/syntax/python.py /usr/lib64/python3.13/site-packages/pmg_qt/volume.py /usr/lib64/python3.13/site-packages/pmg_tk /usr/lib64/python3.13/site-packages/pmg_tk/ColorEditor.py /usr/lib64/python3.13/site-packages/pmg_tk/Demo.py /usr/lib64/python3.13/site-packages/pmg_tk/PMGApp.py /usr/lib64/python3.13/site-packages/pmg_tk/PyMOLMapLoad.py /usr/lib64/python3.13/site-packages/pmg_tk/SetEditor.py /usr/lib64/python3.13/site-packages/pmg_tk/Setting.py /usr/lib64/python3.13/site-packages/pmg_tk/TextEditor.py /usr/lib64/python3.13/site-packages/pmg_tk/__init__.py /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__ /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/ColorEditor.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/ColorEditor.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/Demo.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/Demo.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/PMGApp.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/PMGApp.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/PyMOLMapLoad.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/PyMOLMapLoad.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/SetEditor.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/SetEditor.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/Setting.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/Setting.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/TextEditor.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/TextEditor.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/volume.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/__pycache__/volume.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins /usr/lib64/python3.13/site-packages/pmg_tk/skins/__init__.py /usr/lib64/python3.13/site-packages/pmg_tk/skins/__pycache__ /usr/lib64/python3.13/site-packages/pmg_tk/skins/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/demo /usr/lib64/python3.13/site-packages/pmg_tk/skins/demo/__init__.py /usr/lib64/python3.13/site-packages/pmg_tk/skins/demo/__pycache__ /usr/lib64/python3.13/site-packages/pmg_tk/skins/demo/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/demo/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/ModalWindow.py /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/__init__.py /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/__pycache__ /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/__pycache__/ModalWindow.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/__pycache__/ModalWindow.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/__pycache__/builder.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/__pycache__/builder.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/skins/normal/builder.py /usr/lib64/python3.13/site-packages/pmg_tk/startup /usr/lib64/python3.13/site-packages/pmg_tk/startup/__init__.py /usr/lib64/python3.13/site-packages/pmg_tk/startup/__pycache__ /usr/lib64/python3.13/site-packages/pmg_tk/startup/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pmg_tk/startup/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pmg_tk/volume.py /usr/lib64/python3.13/site-packages/pymol /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/INSTALLER /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/METADATA /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/RECORD /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/REQUESTED /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/WHEEL /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/entry_points.txt /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/licenses /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/licenses/AUTHORS /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/licenses/LICENSE /usr/lib64/python3.13/site-packages/pymol-3.1.0.dist-info/top_level.txt /usr/lib64/python3.13/site-packages/pymol/Qt /usr/lib64/python3.13/site-packages/pymol/Qt/__init__.py /usr/lib64/python3.13/site-packages/pymol/Qt/__pycache__ /usr/lib64/python3.13/site-packages/pymol/Qt/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/Qt/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/Qt/__pycache__/utils.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/Qt/__pycache__/utils.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/Qt/utils.py /usr/lib64/python3.13/site-packages/pymol/__init__.py /usr/lib64/python3.13/site-packages/pymol/__main__.py /usr/lib64/python3.13/site-packages/pymol/__pycache__ /usr/lib64/python3.13/site-packages/pymol/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/__main__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/__main__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/_gui.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/_gui.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/api.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/api.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/callback.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/callback.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/cgo.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/cgo.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/cgobuilder.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/cgobuilder.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/checking.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/checking.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/cmd.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/cmd.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/colorprinting.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/colorprinting.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/colorramping.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/colorramping.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/commanding.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/commanding.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/completing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/completing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/computing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/computing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/constants.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/constants.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/constants_palette.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/constants_palette.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/controlling.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/controlling.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/creating.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/creating.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/diagnosing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/diagnosing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/editing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/editing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/editor.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/editor.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/experimenting.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/experimenting.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/exporting.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/exporting.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/externing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/externing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/feedingback.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/feedingback.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/fitting.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/fitting.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/gui.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/gui.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/headering.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/headering.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/helping.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/helping.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/importing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/importing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/internal.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/internal.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/invocation.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/invocation.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/keyboard.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/keyboard.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/keywords.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/keywords.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/lazyio.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/lazyio.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/locking.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/locking.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/menu.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/menu.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/monitoring.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/monitoring.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/morphing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/morphing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/movie.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/movie.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/moving.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/moving.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/mpeg_encode.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/mpeg_encode.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/parser.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/parser.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/parsing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/parsing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/povray.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/povray.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/preset.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/preset.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/pymolhttpd.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/pymolhttpd.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/querying.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/querying.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/rpc.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/rpc.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/save_shortcut.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/save_shortcut.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/selecting.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/selecting.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/selector.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/selector.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/seqalign.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/seqalign.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/setting.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/setting.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/shortcut.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/shortcut.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/shortcut_dict.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/shortcut_dict.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/shortcut_manager.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/shortcut_manager.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/util.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/util.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/vfont.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/vfont.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/viewing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/viewing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/wizarding.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/wizarding.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/xray.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/xray.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/xwin.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/__pycache__/xwin.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-powerpc64le-linux-gnu.so /usr/lib64/python3.13/site-packages/pymol/_gui.py /usr/lib64/python3.13/site-packages/pymol/api.py /usr/lib64/python3.13/site-packages/pymol/callback.py /usr/lib64/python3.13/site-packages/pymol/cgo.py /usr/lib64/python3.13/site-packages/pymol/cgobuilder.py /usr/lib64/python3.13/site-packages/pymol/checking.py /usr/lib64/python3.13/site-packages/pymol/cmd.py /usr/lib64/python3.13/site-packages/pymol/colorprinting.py /usr/lib64/python3.13/site-packages/pymol/colorramping.py /usr/lib64/python3.13/site-packages/pymol/commanding.py /usr/lib64/python3.13/site-packages/pymol/completing.py /usr/lib64/python3.13/site-packages/pymol/computing.py /usr/lib64/python3.13/site-packages/pymol/constants.py /usr/lib64/python3.13/site-packages/pymol/constants_palette.py /usr/lib64/python3.13/site-packages/pymol/controlling.py /usr/lib64/python3.13/site-packages/pymol/creating.py /usr/lib64/python3.13/site-packages/pymol/diagnosing.py /usr/lib64/python3.13/site-packages/pymol/editing.py /usr/lib64/python3.13/site-packages/pymol/editor.py /usr/lib64/python3.13/site-packages/pymol/experimenting.py /usr/lib64/python3.13/site-packages/pymol/exporting.py /usr/lib64/python3.13/site-packages/pymol/externing.py /usr/lib64/python3.13/site-packages/pymol/feedingback.py /usr/lib64/python3.13/site-packages/pymol/fitting.py /usr/lib64/python3.13/site-packages/pymol/gui.py /usr/lib64/python3.13/site-packages/pymol/headering.py /usr/lib64/python3.13/site-packages/pymol/helping.py /usr/lib64/python3.13/site-packages/pymol/importing.py /usr/lib64/python3.13/site-packages/pymol/internal.py /usr/lib64/python3.13/site-packages/pymol/invocation.py /usr/lib64/python3.13/site-packages/pymol/keyboard.py /usr/lib64/python3.13/site-packages/pymol/keywords.py /usr/lib64/python3.13/site-packages/pymol/lazyio.py /usr/lib64/python3.13/site-packages/pymol/locking.py /usr/lib64/python3.13/site-packages/pymol/menu.py /usr/lib64/python3.13/site-packages/pymol/monitoring.py /usr/lib64/python3.13/site-packages/pymol/morphing.py /usr/lib64/python3.13/site-packages/pymol/movie.py /usr/lib64/python3.13/site-packages/pymol/moving.py /usr/lib64/python3.13/site-packages/pymol/mpeg_encode.py /usr/lib64/python3.13/site-packages/pymol/parser.py /usr/lib64/python3.13/site-packages/pymol/parsing.py /usr/lib64/python3.13/site-packages/pymol/plugins /usr/lib64/python3.13/site-packages/pymol/plugins/__init__.py /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__ /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/installation.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/installation.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/legacysupport.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/legacysupport.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/managergui.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/managergui.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/managergui_qt.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/managergui_qt.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/repository.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/__pycache__/repository.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/plugins/installation.py /usr/lib64/python3.13/site-packages/pymol/plugins/legacysupport.py /usr/lib64/python3.13/site-packages/pymol/plugins/managergui.py /usr/lib64/python3.13/site-packages/pymol/plugins/managergui_qt.py /usr/lib64/python3.13/site-packages/pymol/plugins/repository.py /usr/lib64/python3.13/site-packages/pymol/povray.py /usr/lib64/python3.13/site-packages/pymol/preset.py /usr/lib64/python3.13/site-packages/pymol/pymol_path /usr/lib64/python3.13/site-packages/pymol/pymol_path/LICENSE /usr/lib64/python3.13/site-packages/pymol/pymol_path/data /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chem_comp_bond-top100.cif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ace.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/acetylene.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ala.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/arg.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/argn.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/asn.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/asp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/asph.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/atp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/atpA.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/atpB.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/atp_ttpA.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/atp_ttpB.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/benzene.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/benzocycloheptane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/butane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_ala.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_arg.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_argn.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_asn.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_asp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_asph.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_cys.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_gln.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_glu.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_gluh.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_gly.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_hid.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_hie.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_hip.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_his.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_ile.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_leu.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_lys.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_lysn.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_met.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_phe.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_pro.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_ser.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_thr.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_trp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_tyr.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ct_val.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ctp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ctpA.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ctpB.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ctp_gtpA.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ctp_gtpB.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/cyanide.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/cyclobutane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/cycloheptane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/cyclohexane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/cyclopentadiene.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/cyclopentane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/cyclopropane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/cys.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ethylene.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/formaldehyde.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/formamide.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/formic.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/gln.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/glu.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/gluh.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/gly.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/gtp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/gtpA.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/gtpB.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/gtp_ctpA.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/gtp_ctpB.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/hid.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/hie.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/hip.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/his.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ile.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/indane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/leu.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/lys.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/lysn.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/met.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/methane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/methanol.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/napthylene.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nhh.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nitro.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nme.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_ala.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_arg.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_argn.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_asn.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_asp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_asph.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_cys.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_gln.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_glu.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_gluh.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_gly.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_hid.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_hie.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_hip.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_his.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_ile.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_leu.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_lys.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_lysn.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_met.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_phe.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_pro.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_ser.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_thr.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_trp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_tyr.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/nt_val.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/peptide.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/phe.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/phosphite.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/pro.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/realtime.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ser.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/sulfone.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/thr.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/trifluoromethane.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/trp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ttp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ttpA.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ttpB.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ttp_atpA.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/ttp_atpB.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/tyr.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/utp.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/utpA.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/fragments/val.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/__pycache__ /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/__pycache__/generate1.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/__pycache__/generate1.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/__pycache__/generate2.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/__pycache__/generate2.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/__pycache__/sc_bb_dep.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/__pycache__/sc_bb_dep.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/__pycache__/sc_bb_ind.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/__pycache__/sc_bb_ind.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/generate2.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_dep.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_dep.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_ind.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_ind.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_library.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/Makefile.delsci /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/__pycache__ /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/__pycache__/make99_simple.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/__pycache__/make99_simple.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/__pycache__/make_simple.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/__pycache__/make_simple.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/chempy.prm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make99_simple.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/parm94.dat /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/parm94_rsm.dat /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/parm96.dat /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/parm96_rsm.dat /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/parm99.dat /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/parm99_simple.dat /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/parm99_wld.dat /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/parm_simple.dat /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/parm_simple.inp /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/chempy/water.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo/1hpv.r3d /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo/1tii.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo/__pycache__ /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo/__pycache__/cgo03.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo/__pycache__/cgo03.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo/cgo03.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo/il2.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo/pept.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/demo/pept.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/openvr /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/openvr/actions.json /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/openvr/bindings_vive_controller.json /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/openvr/hints_vive_controller.png /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/openvr/hints_vive_controller.svg /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/openvr/menu_splash.png /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/openvr/menu_splash.svg /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_qt /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_qt/icons /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_qt/icons/refresh.svg /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_qt/styles /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_qt/styles/pymol.sty /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro5.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro5.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro6.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro6.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro65.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro65.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro66.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro66.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro67.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro67.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc3.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc3.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc4.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc4.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc5.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc5.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc6.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc6.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc7.gif /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc7.xbm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pymol /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pymol/cmyk.png /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pymol/hsv.ppm /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pymol/icons /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pymol/icons/icon2.svg /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pymol/matrices /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pymol/matrices/BLOSUM62 /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/pymol/splash.png /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/setting_help.csv /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/anaglyph_header.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/bezier.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/bezier.tsc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/bezier.tse /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/bezier.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/bg.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/bg.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/call_compute_color_for_light.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/compute_color_for_light.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/compute_fog_color.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/connector.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/connector.gs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/connector.shared /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/connector.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/copy.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/copy.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/cylinder.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/cylinder.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/default.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/default.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/indicator.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/indicator.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/label.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/label.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/line.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/line.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/oit.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/oit.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/ramp.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/ramp.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/screen.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/screen.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/sphere.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/sphere.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/surface.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/surface.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/trilines.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/trilines.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/volume.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/volume.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/vrcontroller.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/vrcontroller.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/webgl_header.fs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/shaders/webgl_header.vs /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/README.txt /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__init__.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__pycache__ /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__pycache__/creating.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__pycache__/creating.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__pycache__/electrostatics.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__pycache__/electrostatics.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__pycache__/qtwidgets.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/__pycache__/qtwidgets.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/apbs.ui /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/creating.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/electrostatics.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/apbs_gui/qtwidgets.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/lightingsettings_gui /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/lightingsettings_gui/__init__.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/lightingsettings_gui/__pycache__ /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/lightingsettings_gui/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/lightingsettings_gui/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/lightingsettings_gui/__pycache__/main.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/lightingsettings_gui/__pycache__/main.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/startup/lightingsettings_gui/main.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/test /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/test/double.png /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/test/single-right.png /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/test/single.png /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/tut /usr/lib64/python3.13/site-packages/pymol/pymol_path/data/tut/1hpv.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/chempy /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/chempy/__pycache__ /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/chempy/__pycache__/generate_amber.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/chempy/__pycache__/generate_amber.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/chempy/__pycache__/generate_mmff.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/chempy/__pycache__/generate_mmff.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/chempy/generate_amber.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/chempy/generate_mmff.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/__pycache__ /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/__pycache__/build_peptide.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/__pycache__/build_peptide.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/__pycache__/dali.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/__pycache__/dali.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/__pycache__/symsph.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/__pycache__/symsph.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/area_diff.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/build_peptide.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/contact.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/dali.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/density.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/groel_es.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/multiclip_ray.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/packing.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/packsurf.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/ref_frame.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/ribosome.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/scenes2movie.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/seq_match_sele.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/ss_xfer.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/cookbook/symsph.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__ /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/brick01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/brick01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo02.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo02.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo03.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo03.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo04.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo04.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo05.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo05.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo06.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo06.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo07.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo07.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo08.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo08.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo_3Dtext01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo_3Dtext01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo_axes.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo_axes.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo_label_hack.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo_label_hack.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo_plane.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/cgo_plane.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/chempy_model01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/chempy_model01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/chempy_model02.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/chempy_model02.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/chempy_model03.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/chempy_model03.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/click_ordered_list.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/click_ordered_list.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/count_molecules.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/count_molecules.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/extend_demo01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/extend_demo01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/gl01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/gl01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/gl02.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/gl02.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/gl03.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/gl03.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/importing.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/importing.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/link_demo.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/link_demo.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/membrane.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/membrane.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/mutate02.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/mutate02.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/my_ext_gui.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/my_ext_gui.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/particle01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/particle01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/particle02.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/particle02.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/pick_wiz.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/pick_wiz.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/povray01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/povray01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/sele_wiz.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/sele_wiz.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/start_pymol.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/start_pymol.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/syncmol.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/syncmol.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/tkwindow.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/tkwindow.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/webgui01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/webgui01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/webgui02.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/webgui02.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/xmlrpc01.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/xmlrpc01.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/xmlrpc02.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/__pycache__/xmlrpc02.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/brick01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cam2crd.pym /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo02.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo03.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo04.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo05.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo06.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo07.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo08.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo_3Dtext01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo_axes.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo_label_hack.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/cgo_plane.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/chempy_model01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/chempy_model02.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/chempy_model03.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/click_ordered_list.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/count_molecules.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/demo.sdf /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/extend_demo01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/gl01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/gl02.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/gl03.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/hole_vmd_tri.pym /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/importing.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/link_demo.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/membrane.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/mutate01.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/mutate02.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/my_ext_gui.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/particle01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/particle02.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/pick_wiz.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/povray01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/scenes_to_movie01.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/sd_annotate.pml /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/sele_wiz.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/start_pymol.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/syncmol.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/tkwindow.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/webgui01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/webgui02.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/xmlrpc01.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/devel/xmlrpc02.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/README /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/__pycache__ /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/__pycache__/launch_demo.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/__pycache__/launch_demo.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/__pycache__/launch_viewer1.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/__pycache__/launch_viewer1.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/__pycache__/launch_viewer2.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/__pycache__/launch_viewer2.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/launch_demo.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/launch_viewer1.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/examples/launching/launch_viewer2.py /usr/lib64/python3.13/site-packages/pymol/pymol_path/test /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/1tii.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/3al1.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/3al1.r3d /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/embed01.p1m /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/embed02.p1m /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/embed03.p1m /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/embed04.p1m /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/embed05.p1m /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/embed06.p1m /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/helix_amber.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/il2.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/ligs3d.sdf /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/names.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/odd01.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/odd02.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/pept.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/pept.pkl /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/pept.r3d /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/small01.mol /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/small02.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/small03.mol2 /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/tiny.pdb /usr/lib64/python3.13/site-packages/pymol/pymol_path/test/dat/water.pdb /usr/lib64/python3.13/site-packages/pymol/pymolhttpd.py /usr/lib64/python3.13/site-packages/pymol/querying.py /usr/lib64/python3.13/site-packages/pymol/rpc.py /usr/lib64/python3.13/site-packages/pymol/save_shortcut.py /usr/lib64/python3.13/site-packages/pymol/selecting.py /usr/lib64/python3.13/site-packages/pymol/selector.py /usr/lib64/python3.13/site-packages/pymol/seqalign.py /usr/lib64/python3.13/site-packages/pymol/setting.py /usr/lib64/python3.13/site-packages/pymol/shortcut.py /usr/lib64/python3.13/site-packages/pymol/shortcut_dict.py /usr/lib64/python3.13/site-packages/pymol/shortcut_manager.py /usr/lib64/python3.13/site-packages/pymol/stereochemistry /usr/lib64/python3.13/site-packages/pymol/stereochemistry/__init__.py /usr/lib64/python3.13/site-packages/pymol/stereochemistry/__pycache__ /usr/lib64/python3.13/site-packages/pymol/stereochemistry/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/stereochemistry/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/util.py /usr/lib64/python3.13/site-packages/pymol/vfont.py /usr/lib64/python3.13/site-packages/pymol/viewing.py /usr/lib64/python3.13/site-packages/pymol/wizard /usr/lib64/python3.13/site-packages/pymol/wizard/__init__.py /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__ /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/annotation.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/annotation.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/appearance.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/appearance.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/benchmark.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/benchmark.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/box.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/box.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/charge.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/charge.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/cleanup.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/cleanup.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/command.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/command.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/demo.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/demo.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/density.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/density.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/distance.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/distance.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/dragging.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/dragging.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/filter.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/filter.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/label.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/label.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/measurement.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/measurement.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/message.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/message.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/mutagenesis.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/mutagenesis.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/nucmutagenesis.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/nucmutagenesis.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/openvr.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/openvr.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/pair_fit.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/pair_fit.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/pseudoatom.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/pseudoatom.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/renaming.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/renaming.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/sculpting.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/sculpting.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/security.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/security.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/stereodemo.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/stereodemo.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/toggle.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/__pycache__/toggle.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol/wizard/annotation.py /usr/lib64/python3.13/site-packages/pymol/wizard/appearance.py /usr/lib64/python3.13/site-packages/pymol/wizard/benchmark.py /usr/lib64/python3.13/site-packages/pymol/wizard/box.py /usr/lib64/python3.13/site-packages/pymol/wizard/charge.py /usr/lib64/python3.13/site-packages/pymol/wizard/cleanup.py /usr/lib64/python3.13/site-packages/pymol/wizard/command.py /usr/lib64/python3.13/site-packages/pymol/wizard/demo.py /usr/lib64/python3.13/site-packages/pymol/wizard/density.py /usr/lib64/python3.13/site-packages/pymol/wizard/distance.py /usr/lib64/python3.13/site-packages/pymol/wizard/dragging.py /usr/lib64/python3.13/site-packages/pymol/wizard/filter.py /usr/lib64/python3.13/site-packages/pymol/wizard/label.py /usr/lib64/python3.13/site-packages/pymol/wizard/measurement.py /usr/lib64/python3.13/site-packages/pymol/wizard/message.py /usr/lib64/python3.13/site-packages/pymol/wizard/mutagenesis.py /usr/lib64/python3.13/site-packages/pymol/wizard/nucmutagenesis.py /usr/lib64/python3.13/site-packages/pymol/wizard/openvr.py /usr/lib64/python3.13/site-packages/pymol/wizard/pair_fit.py /usr/lib64/python3.13/site-packages/pymol/wizard/pseudoatom.py /usr/lib64/python3.13/site-packages/pymol/wizard/renaming.py /usr/lib64/python3.13/site-packages/pymol/wizard/sculpting.py /usr/lib64/python3.13/site-packages/pymol/wizard/security.py /usr/lib64/python3.13/site-packages/pymol/wizard/stereodemo.py /usr/lib64/python3.13/site-packages/pymol/wizard/toggle.py /usr/lib64/python3.13/site-packages/pymol/wizarding.py /usr/lib64/python3.13/site-packages/pymol/xray.py /usr/lib64/python3.13/site-packages/pymol/xwin.py /usr/lib64/python3.13/site-packages/pymol2 /usr/lib64/python3.13/site-packages/pymol2/__init__.py /usr/lib64/python3.13/site-packages/pymol2/__pycache__ /usr/lib64/python3.13/site-packages/pymol2/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol2/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol2/__pycache__/cmd2.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/pymol2/__pycache__/cmd2.cpython-313.pyc /usr/lib64/python3.13/site-packages/pymol2/cmd2.py /usr/lib64/python3.13/site-packages/web /usr/lib64/python3.13/site-packages/web/examples /usr/lib64/python3.13/site-packages/web/examples/__init__.py /usr/lib64/python3.13/site-packages/web/examples/__pycache__ /usr/lib64/python3.13/site-packages/web/examples/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/web/examples/__pycache__/__init__.cpython-313.pyc /usr/lib64/python3.13/site-packages/web/examples/__pycache__/justhttpd.cpython-313.opt-1.pyc /usr/lib64/python3.13/site-packages/web/examples/__pycache__/justhttpd.cpython-313.pyc /usr/lib64/python3.13/site-packages/web/examples/justhttpd.py /usr/share/doc/packages/python313-pymol /usr/share/doc/packages/python313-pymol/ChangeLog /usr/share/doc/packages/python313-pymol/README /usr/share/licenses/python313-pymol /usr/share/licenses/python313-pymol/LICENSE
Generated by rpm2html 1.8.1
Fabrice Bellet, Tue Sep 30 22:29:13 2025