bowtie-1.2.3-bp153.1.74 RPM for x86_64

From OpenSuSE Leap 15.3 for x86_64

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

Provides

• bowtie
• bowtie(x86-64)

Requires

• /usr/bin/python
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.2.5)(64bit)
• libm.so.6(GLIBC_2.27)(64bit)
• libpthread.so.0()(64bit)
• libpthread.so.0(GLIBC_2.2.5)(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.8)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.22)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• libtbb.so.2()(64bit)
• libtbbmalloc_proxy.so.2()(64bit)
• libz.so.1()(64bit)
• libz.so.1(ZLIB_1.2.3.3)(64bit)
• libz.so.1(ZLIB_1.2.3.5)(64bit)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsXz) <= 5.2-1

License

Artistic-1.0

Changelog

* Tue May 12 2020 Guillaume GARDET <guillaume.gardet@opensuse.org>
  - aarch64 is not yet supported on Bowtie1. See:
    https://github.com/BenLangmead/bowtie/pull/13
* Thu Nov 07 2019 Atri Bhattacharya <badshah400@gmail.com>
  - Update to version 1.2.3:
    * Added support for reading and inspecting Bowtie 2 indexes.
      Bowtie 2 indexes can now be used with either Bowtie or Bowtie
      2.
    * Added support for building an index from a gzipped-compressed
      FASTA.
    * Fixed issue preventing bowtie from reporting repeated
      alignments when -M is specified.
    * Fixed issue with -F mode omitting final base of each read.
    * Fixed clipping of first letter of first read in batches after
      first.
    * Fixed an issue preventing bowtie wrapper script from finding
      indexes.
  - New BuildRequires: tbb-devel.
  - Fix env based hashbangs.
  - Use %%license to install LICENSE.
  - Only build on 64-bit, building on 32-bit is no longer supported.
* Thu May 05 2016 flyos@mailoo.org
  - Initial release

Files

/usr/bin/bowtie
/usr/bin/bowtie-align-l
/usr/bin/bowtie-align-s
/usr/bin/bowtie-build
/usr/bin/bowtie-build-l
/usr/bin/bowtie-build-s
/usr/bin/bowtie-inspect
/usr/bin/bowtie-inspect-l
/usr/bin/bowtie-inspect-s
/usr/share/doc/packages/bowtie
/usr/share/doc/packages/bowtie/AUTHORS
/usr/share/doc/packages/bowtie/MANUAL
/usr/share/doc/packages/bowtie/NEWS
/usr/share/doc/packages/bowtie/README
/usr/share/doc/packages/bowtie/TUTORIAL
/usr/share/doc/packages/bowtie/VERSION
/usr/share/licenses/bowtie
/usr/share/licenses/bowtie/LICENSE

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Fabrice Bellet, Tue Jul 9 14:00:23 2024