fastx_toolkit-0.0.14-32.fc39 RPM for x86_64

From Fedora 39 for x86_64 / f

The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.

Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).

The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.

However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.

The FASTX-Toolkit tools perform some of these preprocessing tasks.

Provides

• fastx_toolkit
• fastx_toolkit(x86-64)

Requires

• /usr/bin/bash
• /usr/bin/perl
• glibc >= 2.37.9000-17
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.38)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libgtextutils-0.7.so.0()(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.5)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.18)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• perl(Carp)
• perl(Data::Dumper)
• perl(GD::Graph::bars)
• perl(Getopt::Long)
• perl(IO::Handle)
• perl(PerlIO::gzip)
• perl(strict)
• perl(warnings)
• perl-GDGraph
• perl-PerlIO-gzip
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)
• sed

License

AGPLv3+

Changelog

* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-32
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-31
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-30
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-29
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-28
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

Files

/usr/bin/fasta_clipping_histogram.pl
/usr/bin/fasta_formatter
/usr/bin/fasta_nucleotide_changer
/usr/bin/fastq_masker
/usr/bin/fastq_quality_boxplot_graph.sh
/usr/bin/fastq_quality_converter
/usr/bin/fastq_quality_filter
/usr/bin/fastq_quality_trimmer
/usr/bin/fastq_to_fasta
/usr/bin/fastx_artifacts_filter
/usr/bin/fastx_barcode_splitter.pl
/usr/bin/fastx_clipper
/usr/bin/fastx_collapser
/usr/bin/fastx_nucleotide_distribution_graph.sh
/usr/bin/fastx_nucleotide_distribution_line_graph.sh
/usr/bin/fastx_quality_stats
/usr/bin/fastx_renamer
/usr/bin/fastx_reverse_complement
/usr/bin/fastx_trimmer
/usr/bin/fastx_uncollapser
/usr/lib/.build-id
/usr/lib/.build-id/10
/usr/lib/.build-id/10/dcbc485510a9b64d195aef13963795327535af
/usr/lib/.build-id/35
/usr/lib/.build-id/35/7f206f1c3e703f9fdf3ad0457d185c79c4c46e
/usr/lib/.build-id/38
/usr/lib/.build-id/38/408989c19a30c1dd80de3b422c1371d317e431
/usr/lib/.build-id/4c
/usr/lib/.build-id/4c/7cefbab685fb0c7486dfce556fc0620333aae5
/usr/lib/.build-id/5d
/usr/lib/.build-id/5d/b797d2f5b3782aa49b50677844fe886485a3af
/usr/lib/.build-id/73
/usr/lib/.build-id/73/e43e337f7fbec681ab712f37b592f32d44fca8
/usr/lib/.build-id/8a
/usr/lib/.build-id/8a/76b6b12f45ab51dd359b7813de8bfb7b616d29
/usr/lib/.build-id/8a/da90a556d9102b68ba9e447d3af1201ba48012
/usr/lib/.build-id/a6
/usr/lib/.build-id/a6/4e7617de5f8c2f768ecc0a76de0d962d7b5ea1
/usr/lib/.build-id/a8
/usr/lib/.build-id/a8/f4d1f74de6174739e5d50407c7795b722b032d
/usr/lib/.build-id/aa
/usr/lib/.build-id/aa/99026dde8abe67c091bdbad02c9d8140bf66d1
/usr/lib/.build-id/cd
/usr/lib/.build-id/cd/7f5cdc372fb7404957702d0d16575f9fd41b3c
/usr/lib/.build-id/ec
/usr/lib/.build-id/ec/e3403821e99134591f3c9310765e1a4cd5acb7
/usr/lib/.build-id/f7
/usr/lib/.build-id/f7/11f9691044ec3eef6af2780021fec31320e3d6
/usr/lib/.build-id/fd
/usr/lib/.build-id/fd/1cd8937d9b7d520282b15602341123bda48022
/usr/share/doc/fastx_toolkit
/usr/share/doc/fastx_toolkit/AUTHORS
/usr/share/doc/fastx_toolkit/COPYING
/usr/share/doc/fastx_toolkit/NEWS
/usr/share/doc/fastx_toolkit/README
/usr/share/doc/fastx_toolkit/THANKS

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Fabrice Bellet, Wed Apr 10 01:59:24 2024