fastx_toolkit-0.0.14-30.fc37 RPM for x86_64

From Fedora 37 for x86_64 / f

The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.

Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).

The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.

However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.

The FASTX-Toolkit tools perform some of these preprocessing tasks.

Provides

• fastx_toolkit
• fastx_toolkit(x86-64)

Requires

• /usr/bin/bash
• /usr/bin/perl
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libgtextutils-0.7.so.0()(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.5)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.18)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• perl(Carp)
• perl(Data::Dumper)
• perl(GD::Graph::bars)
• perl(Getopt::Long)
• perl(IO::Handle)
• perl(PerlIO::gzip)
• perl(strict)
• perl(warnings)
• perl-GDGraph
• perl-PerlIO-gzip
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)
• sed

License

AGPLv3+

Changelog

* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-30
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-29
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-28
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-27
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Wed Aug 26 2020 Jeff Law <law@redhat.com> - 0.0.14-26
  - No longer force C++11 mode
* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-25
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild

Files

/usr/bin/fasta_clipping_histogram.pl
/usr/bin/fasta_formatter
/usr/bin/fasta_nucleotide_changer
/usr/bin/fastq_masker
/usr/bin/fastq_quality_boxplot_graph.sh
/usr/bin/fastq_quality_converter
/usr/bin/fastq_quality_filter
/usr/bin/fastq_quality_trimmer
/usr/bin/fastq_to_fasta
/usr/bin/fastx_artifacts_filter
/usr/bin/fastx_barcode_splitter.pl
/usr/bin/fastx_clipper
/usr/bin/fastx_collapser
/usr/bin/fastx_nucleotide_distribution_graph.sh
/usr/bin/fastx_nucleotide_distribution_line_graph.sh
/usr/bin/fastx_quality_stats
/usr/bin/fastx_renamer
/usr/bin/fastx_reverse_complement
/usr/bin/fastx_trimmer
/usr/bin/fastx_uncollapser
/usr/lib/.build-id
/usr/lib/.build-id/0a
/usr/lib/.build-id/0a/26cbfe26a22e6855e10b0ec4bb380fae22ca75
/usr/lib/.build-id/0d
/usr/lib/.build-id/0d/4e551ca51dacd7982f88e4d2cf80eb1e4c842f
/usr/lib/.build-id/1b
/usr/lib/.build-id/1b/528f84bd1d2e4cdbae920c827af03bf5d972d7
/usr/lib/.build-id/1f
/usr/lib/.build-id/1f/dfdb16ac715068fe2edbddba3475e7b19caa62
/usr/lib/.build-id/20
/usr/lib/.build-id/20/c1a0075e6c8b07e38d7be633daef6a455ad6c6
/usr/lib/.build-id/4c
/usr/lib/.build-id/4c/1c186b85bf1a5450d22a9c414e1849aba12314
/usr/lib/.build-id/72
/usr/lib/.build-id/72/068681513a708e90ff5dbcf76c8f0e1afac7b2
/usr/lib/.build-id/9c
/usr/lib/.build-id/9c/a396a6d55664c2ed8534d017d58bea3de3099b
/usr/lib/.build-id/9f
/usr/lib/.build-id/9f/996d30c2a777c8ac4e47d3f6bf04ff40ff5b80
/usr/lib/.build-id/a6
/usr/lib/.build-id/a6/17152c9c006363e714d88dd602828a92597765
/usr/lib/.build-id/aa
/usr/lib/.build-id/aa/1884b301cd45097179d3a2d361e53fde01afd1
/usr/lib/.build-id/ae
/usr/lib/.build-id/ae/51db8ecf53dbfe2347601846e64aa6053bfb80
/usr/lib/.build-id/df
/usr/lib/.build-id/df/2e0ee27a502d4f666fc12171e0a370ca3a93f5
/usr/lib/.build-id/f7
/usr/lib/.build-id/f7/5c8f4b4efb07bbd3f5c205dcbfca4c7f9f98ef
/usr/lib/.build-id/fc
/usr/lib/.build-id/fc/d28d3795d27132599b211a6bd17837e8a3ddf1
/usr/share/doc/fastx_toolkit
/usr/share/doc/fastx_toolkit/AUTHORS
/usr/share/doc/fastx_toolkit/COPYING
/usr/share/doc/fastx_toolkit/NEWS
/usr/share/doc/fastx_toolkit/README
/usr/share/doc/fastx_toolkit/THANKS

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Fabrice Bellet, Tue Apr 9 20:33:48 2024